PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9462s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 245aa    MW: 26204.2 Da    PI: 10.1466
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9462s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.54.9e-3830136389
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasns 85 
                          +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++               +++ 
  Araha.9462s0010.1.p  30 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStasvsirG-------TNST 112
                          79*************************************************************9999977732222221.......2211 PP

                  TCP  86 ssg....................k 89 
                          s +                    k
  Araha.9462s0010.1.p 113 SLSssldhkptsllggsspfilgK 136
                          111233333344555433333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.8923589IPR017887Transcription factor TCP subgroup
PfamPF036346.8E-3435152IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSINNINNNN DGVMISSNGA LIEQPSSVVV KKPPAKDRHS KVDGRGRRIR MPIICAARVF  60
QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TASVSIRGTN STSLSSSLDH  120
KPTSLLGGSS PFILGKRVRA DEDNNNHNSG GKDESFTTTP AGFWAVPARP DFGQVWSFTG  180
APQEMFLQQH HQQPLFVHQQ QQQQAAMGEA SAARVGNYLP GHLNLLASLS GGSPGSGRRE  240
EDPR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076480.0AB007648.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD15.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872048.11e-150hypothetical protein ARALYDRAFT_489189
SwissprotQ9FMX21e-145TCP7_ARATH; Transcription factor TCP7
TrEMBLD7M1Q21e-150D7M1Q2_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.6__2323__AT5G23280.11e-150(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-110TCP family protein